django_mri
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django_mri
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W
A
add_supplementary_outputs() (django_mri.analysis.interfaces.mrtrix3.dwifslpreproc.DwiFslPreproc method)
added_by (django_mri.models.scan.Scan attribute)
AP (django_mri.utils.bids.DATA_TYPES attribute)
(django_mri.utils.bids.MODALITY_LABELS attribute)
APPLY_TOPUP_INPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.apply_topup)
APPLY_TOPUP_OUTPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.apply_topup)
authentication_classes (django_mri.views.defaults.DefaultsMixin attribute)
AUXILIARY_OUTPUT (django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.segmentation.Segmentation attribute)
(in module django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.outputs)
B
b_value (django_mri.models.nifti.NIfTI attribute)
b_vector (django_mri.models.nifti.NIfTI attribute)
BASE_DIR (in module django_mri.analysis.interfaces.dcm2niix)
base_filters (django_mri.filters.scan_filter.ScanFilter attribute)
BATCH_TEMPLATE_ID (django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.segmentation.Segmentation attribute)
BET_INPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.bet)
BET_OUTPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.bet)
BIAS_CORRECT_INPUT_SPECIFICATION (in module django_mri.analysis.specifications.mrtrix3.bias_correct)
BIAS_CORRECT_OUTPUT_SPECIFICATION (in module django_mri.analysis.specifications.mrtrix3.bias_correct)
Bids (class in django_mri.utils.bids)
BINARY_MATHS_INPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.binary_maths)
BINARY_MATHS_OUTPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.binary_maths)
BOOLEAN (django_mri.analysis.interfaces.dcm2niix.Dcm2niix attribute)
C
calculate_age() (django_mri.utils.bids.Bids method)
CAT12_SEGMENTATION_INPUT_SPECIFICATION (in module django_mri.analysis.specifications.spm.cat12.segmentation)
CAT12_SEGMENTATION_OUTPUT_SPECIFICATION (in module django_mri.analysis.specifications.spm.cat12.segmentation)
CAT12_TEMPLATES (in module django_mri.analysis.interfaces.matlab.spm.cat12.utils.batch_templates)
ChoiceArrayField (class in django_mri.models.fields)
clean_unwanted_files() (django_mri.utils.bids.Bids method)
comments (django_mri.models.scan.Scan attribute)
compile_to_bids() (django_mri.models.scan.Scan method)
compose_bids_path() (django_mri.utils.bids.Bids method)
compress() (django_mri.models.nifti.NIfTI method)
(in module django_mri.utils.compression)
compressed (django_mri.models.nifti.NIfTI attribute)
convert() (django_mri.analysis.interfaces.dcm2niix.Dcm2niix method)
convert_to_mif() (django_mri.models.scan.Scan method)
create() (django_mri.serializers.scan.ScanSerializer method)
D
DATA_TYPES (class in django_mri.utils.bids)
DATASET_DESCRIPTION_FILE_NAME (django_mri.utils.bids.Bids attribute)
Dcm2niix (class in django_mri.analysis.interfaces.dcm2niix)
declared_filters (django_mri.filters.scan_filter.ScanFilter attribute)
DEFAULT_BATCH_FILE_NAME (django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.segmentation.Segmentation attribute)
DEFAULT_DICOM_DIR_NAME (in module django_mri.utils.utils)
DEFAULT_MRI_DIR_NAME (in module django_mri.utils.utils)
DEFAULT_OUTPUT_NAME (django_mri.analysis.interfaces.mrtrix3.dwifslpreproc.DwiFslPreproc attribute)
DEFAULT_STUDY_GROUP_MODEL (in module django_mri.utils.utils)
DEFAULT_SUBJECT_MODEL (in module django_mri.utils.utils)
DEFAULTS (django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.segmentation.Segmentation attribute)
DefaultsMixin (class in django_mri.views.defaults)
definition (django_mri.models.inputs.nifti_input.NiftiInput attribute)
(django_mri.models.inputs.scan_input.ScanInput attribute)
(django_mri.models.outputs.nifti_output.NiftiOutput attribute)
DEGIBBS_INPUT_SPECIFICATION (in module django_mri.analysis.specifications.mrtrix3.degibbs)
DEGIBBS_OUTPUT_SPECIFICATION (in module django_mri.analysis.specifications.mrtrix3.degibbs)
description (django_mri.models.scan.Scan attribute)
dicom (django_mri.models.scan.Scan attribute)
DICOM (django_mri.utils.scan_type.ScanType attribute)
dicom_to_nifti() (django_mri.models.scan.Scan method)
django_mri.admin (module)
django_mri.analysis (module)
django_mri.analysis.interfaces (module)
django_mri.analysis.interfaces.dcm2niix (module)
django_mri.analysis.interfaces.fsl (module)
django_mri.analysis.interfaces.fsl.fast (module)
django_mri.analysis.interfaces.fsl.fsl_anat (module)
django_mri.analysis.interfaces.fsl.topup (module)
django_mri.analysis.interfaces.matlab (module)
django_mri.analysis.interfaces.matlab.spm (module)
django_mri.analysis.interfaces.matlab.spm.cat12 (module)
django_mri.analysis.interfaces.matlab.spm.cat12.segmentation (module)
,
[1]
django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.defaults (module)
django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.messages (module)
django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.outputs (module)
django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.segmentation (module)
django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.transformations (module)
django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.utils.verbosify_output_dict (module)
django_mri.analysis.interfaces.matlab.spm.cat12.utils (module)
django_mri.analysis.interfaces.matlab.spm.cat12.utils.batch_templates (module)
django_mri.analysis.interfaces.matlab.spm.cat12.utils.template_files (module)
django_mri.analysis.interfaces.matlab.spm.utils (module)
django_mri.analysis.interfaces.matlab.spm.utils.batch_templates (module)
django_mri.analysis.interfaces.matlab.spm.utils.nifti_validator (module)
django_mri.analysis.interfaces.messages (module)
django_mri.analysis.interfaces.mrtrix3 (module)
django_mri.analysis.interfaces.mrtrix3.dwifslpreproc (module)
django_mri.analysis.messages (module)
django_mri.analysis.mri_interfaces (module)
django_mri.analysis.pipelines (module)
django_mri.analysis.pipelines.dwi_preprocessing (module)
django_mri.analysis.pipelines.fieldmap_correction (module)
django_mri.analysis.specifications (module)
django_mri.analysis.specifications.freesurfer (module)
django_mri.analysis.specifications.freesurfer.recon_all (module)
django_mri.analysis.specifications.fsl (module)
django_mri.analysis.specifications.fsl.apply_topup (module)
django_mri.analysis.specifications.fsl.bet (module)
django_mri.analysis.specifications.fsl.binary_maths (module)
django_mri.analysis.specifications.fsl.eddy (module)
django_mri.analysis.specifications.fsl.fast (module)
django_mri.analysis.specifications.fsl.flirt (module)
django_mri.analysis.specifications.fsl.fnirt (module)
django_mri.analysis.specifications.fsl.fsl_anat (module)
django_mri.analysis.specifications.fsl.fslmerge (module)
django_mri.analysis.specifications.fsl.fslroi (module)
django_mri.analysis.specifications.fsl.mean_image (module)
django_mri.analysis.specifications.fsl.reorient2std (module)
django_mri.analysis.specifications.fsl.robustfov (module)
django_mri.analysis.specifications.fsl.susan (module)
django_mri.analysis.specifications.mrtrix3 (module)
django_mri.analysis.specifications.mrtrix3.bias_correct (module)
django_mri.analysis.specifications.mrtrix3.degibbs (module)
django_mri.analysis.specifications.mrtrix3.denoise (module)
django_mri.analysis.specifications.mrtrix3.dwifslpreproc (module)
django_mri.analysis.specifications.mrtrix3.mrconvert (module)
django_mri.analysis.specifications.spm (module)
django_mri.analysis.specifications.spm.cat12 (module)
django_mri.analysis.specifications.spm.cat12.segmentation (module)
django_mri.analysis.utils.get_latest_analysis_version (module)
django_mri.analysis.visualizers (module)
django_mri.apps (module)
django_mri.filters (module)
django_mri.filters.scan_filter (module)
django_mri.models (module)
django_mri.models.choices (module)
django_mri.models.choices.scanning_sequence (module)
django_mri.models.choices.sequence_variant (module)
django_mri.models.common_sequences (module)
django_mri.models.fields (module)
django_mri.models.help_text (module)
django_mri.models.inputs (module)
django_mri.models.inputs.nifti_input (module)
django_mri.models.inputs.nifti_input_definition (module)
django_mri.models.inputs.scan_input (module)
django_mri.models.inputs.scan_input_definition (module)
django_mri.models.managers (module)
django_mri.models.managers.scan (module)
django_mri.models.messages (module)
django_mri.models.nifti (module)
django_mri.models.outputs (module)
django_mri.models.outputs.nifti_output (module)
django_mri.models.outputs.nifti_output_definition (module)
django_mri.models.outputs.output_definitions (module)
django_mri.models.scan (module)
django_mri.models.sequence_type (module)
django_mri.serializers (module)
django_mri.serializers.input (module)
django_mri.serializers.input.nifti_input (module)
django_mri.serializers.input.nifti_input_definition (module)
django_mri.serializers.input.scan_input (module)
django_mri.serializers.input.scan_input_definition (module)
django_mri.serializers.nifti (module)
django_mri.serializers.output (module)
django_mri.serializers.output.nifti_output (module)
django_mri.serializers.output.nifti_output_definition (module)
django_mri.serializers.scan (module)
django_mri.serializers.sequence_type (module)
django_mri.signals (module)
django_mri.urls (module)
django_mri.utils (module)
django_mri.utils.bids (module)
django_mri.utils.compression (module)
django_mri.utils.messages (module)
django_mri.utils.scan_type (module)
django_mri.utils.utils (module)
django_mri.views (module)
django_mri.views.defaults (module)
django_mri.views.nifti (module)
django_mri.views.pagination (module)
django_mri.views.scan (module)
django_mri.views.sequence_type (module)
django_mri.views.utils (module)
DjangoMriConfig (class in django_mri.apps)
dwi (django_mri.utils.bids.DATA_TYPES attribute)
(django_mri.utils.bids.MODALITY_LABELS attribute)
DwiFslPreproc (class in django_mri.analysis.interfaces.mrtrix3.dwifslpreproc)
DWIFSLPREPROC_INPUT_SPECIFICATION (in module django_mri.analysis.specifications.mrtrix3.dwifslpreproc)
DWIFSLPREPROC_OUTPUT_SPECIFICATION (in module django_mri.analysis.specifications.mrtrix3.dwifslpreproc)
E
echo_time (django_mri.models.scan.Scan attribute)
EDDY_INPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.eddy)
EDDY_OUTPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.eddy)
EDDY_OUTPUTS (django_mri.analysis.interfaces.mrtrix3.dwifslpreproc.DwiFslPreproc attribute)
EP (django_mri.models.choices.scanning_sequence.ScanningSequence attribute)
extract_output_path() (django_mri.analysis.interfaces.dcm2niix.Dcm2niix method)
F
FAST_INPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.fast)
FAST_OUTPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.fast)
FastWrapper (class in django_mri.analysis.interfaces.fsl.fast)
filter_backends (django_mri.views.defaults.DefaultsMixin attribute)
filter_by_sequence_type() (in module django_mri.filters.scan_filter)
filter_class (django_mri.views.scan.ScanViewSet attribute)
fix_bokeh_script() (in module django_mri.views.utils)
fix_functional_json() (django_mri.utils.bids.Bids method)
fix_output_path() (django_mri.analysis.interfaces.fsl.fsl_anat.FslAnat method)
fix_phase_encoding() (django_mri.analysis.interfaces.fsl.topup.TopupWrapper method)
FLAG_ATTRIBUTES (django_mri.analysis.interfaces.fsl.fsl_anat.FslAnat attribute)
FLAGS (django_mri.analysis.interfaces.dcm2niix.Dcm2niix attribute)
(django_mri.analysis.interfaces.fsl.fsl_anat.FslAnat attribute)
(django_mri.analysis.interfaces.mrtrix3.dwifslpreproc.DwiFslPreproc attribute)
flair (django_mri.utils.bids.DATA_TYPES attribute)
(django_mri.utils.bids.MODALITY_LABELS attribute)
FLIRT_INPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.flirt)
FLIRT_OUTPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.flirt)
fmri (django_mri.utils.bids.DATA_TYPES attribute)
(django_mri.utils.bids.MODALITY_LABELS attribute)
FNIRT_INPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.fnirt)
FNIRT_OUTPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.fnirt)
FORCED_SUFFIX (django_mri.analysis.interfaces.fsl.fsl_anat.FslAnat attribute)
formfield() (django_mri.models.fields.ChoiceArrayField method)
from_dicom() (django_mri.views.scan.ScanViewSet method)
FSL_ANAT_INPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.fsl_anat)
FSL_ANAT_OUTPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.fsl_anat)
FslAnat (class in django_mri.analysis.interfaces.fsl.fsl_anat)
FslAnatVisualizer (class in django_mri.analysis.visualizers)
FSLMERGE_INPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.fslmerge)
FSLMERGE_OUTPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.fslmerge)
FSLROI_INPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.fslroi)
FSLROI_OUTPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.fslroi)
G
generate_bidsignore() (django_mri.utils.bids.Bids method)
generate_command() (django_mri.analysis.interfaces.dcm2niix.Dcm2niix method)
(django_mri.analysis.interfaces.fsl.fsl_anat.FslAnat method)
(django_mri.analysis.interfaces.mrtrix3.dwifslpreproc.DwiFslPreproc method)
generate_flags() (django_mri.analysis.interfaces.fsl.fsl_anat.FslAnat method)
generate_output_dict() (django_mri.analysis.interfaces.fsl.fsl_anat.FslAnat method)
(django_mri.analysis.interfaces.mrtrix3.dwifslpreproc.DwiFslPreproc method)
generate_readme() (django_mri.utils.bids.Bids method)
get_b_value() (django_mri.models.nifti.NIfTI method)
get_b_vector() (django_mri.models.nifti.NIfTI method)
get_bids_destination() (django_mri.models.scan.Scan method)
get_data() (django_mri.models.nifti.NIfTI method)
(django_mri.utils.bids.Bids method)
get_default_mif_path() (django_mri.models.scan.Scan method)
get_default_nifti_destination() (django_mri.models.scan.Scan method)
get_default_nifti_dir() (django_mri.models.scan.Scan method)
get_default_nifti_name() (django_mri.models.scan.Scan method)
get_dicom_root() (in module django_mri.utils.utils)
get_effective_spacing() (django_mri.models.nifti.NIfTI method)
get_group_model() (in module django_mri.utils.utils)
get_lastest_analysis_version() (in module django_mri.analysis.utils.get_latest_analysis_version)
get_mri_root() (in module django_mri.utils.utils)
get_phase_encoding_direction() (django_mri.models.nifti.NIfTI method)
get_queryset() (django_mri.views.scan.ScanViewSet method)
get_subject_data() (django_mri.utils.bids.Bids method)
get_subject_model() (in module django_mri.utils.utils)
get_total_readout_time() (django_mri.models.nifti.NIfTI method)
GR (django_mri.models.choices.scanning_sequence.ScanningSequence attribute)
I
import_dicom_data() (django_mri.models.managers.scan.ScanManager method)
import_path() (django_mri.models.managers.scan.ScanManager method)
infer_sequence_type() (django_mri.models.scan.Scan method)
infer_sequence_type_from_dicom() (django_mri.models.scan.Scan method)
input_class (django_mri.models.inputs.nifti_input_definition.NiftiInputDefinition attribute)
(django_mri.models.inputs.scan_input_definition.ScanInputDefinition attribute)
input_image (django_mri.analysis.visualizers.FslAnatVisualizer attribute)
input_set (django_mri.models.inputs.nifti_input_definition.NiftiInputDefinition attribute)
(django_mri.models.inputs.scan_input_definition.ScanInputDefinition attribute)
institution_name (django_mri.models.scan.Scan attribute)
interfaces (in module django_mri.analysis.mri_interfaces)
inversion_time (django_mri.models.scan.Scan attribute)
IR (django_mri.models.choices.scanning_sequence.ScanningSequence attribute)
ir_epi (django_mri.utils.bids.DATA_TYPES attribute)
(django_mri.utils.bids.MODALITY_LABELS attribute)
ir_epi2 (django_mri.utils.bids.DATA_TYPES attribute)
(django_mri.utils.bids.MODALITY_LABELS attribute)
is_compressed (django_mri.models.nifti.NIfTI attribute)
is_raw (django_mri.models.nifti.NIfTI attribute)
is_updated_from_dicom (django_mri.models.scan.Scan attribute)
J
json_data (django_mri.models.nifti.NIfTI attribute)
L
list_display (django_mri.admin.ScanAdmin attribute)
localizer (django_mri.utils.bids.DATA_TYPES attribute)
(django_mri.utils.bids.MODALITY_LABELS attribute)
M
MEAN_IMAGE_INPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.mean_image)
MEAN_IMAGE_OUTPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.mean_image)
media (django_mri.admin.ScanAdmin attribute)
mif (django_mri.models.scan.Scan attribute)
MODALITY_LABELS (class in django_mri.utils.bids)
MP (django_mri.models.choices.sequence_variant.SequenceVariant attribute)
mprage (django_mri.utils.bids.DATA_TYPES attribute)
(django_mri.utils.bids.MODALITY_LABELS attribute)
MRCONVERT_INPUT_SPECIFICATION (in module django_mri.analysis.specifications.mrtrix3.mrconvert)
MRCONVERT_OUTPUT_SPECIFICATION (in module django_mri.analysis.specifications.mrtrix3.mrconvert)
MTC (django_mri.models.choices.sequence_variant.SequenceVariant attribute)
N
name (django_mri.apps.DjangoMriConfig attribute)
NIfTI (class in django_mri.models.nifti)
NIFTI (django_mri.models.outputs.output_definitions.OutputDefinitions attribute)
nifti (django_mri.models.scan.Scan attribute)
NIFTI (django_mri.utils.scan_type.ScanType attribute)
NiftiInput (class in django_mri.models.inputs.nifti_input)
NiftiInputDefinition (class in django_mri.models.inputs.nifti_input_definition)
NiftiInputDefinitionSerializer (class in django_mri.serializers.input.nifti_input_definition)
NiftiInputSerializer (class in django_mri.serializers.input.nifti_input)
NiftiOutput (class in django_mri.models.outputs.nifti_output)
NiftiOutputDefinition (class in django_mri.models.outputs.nifti_output_definition)
NiftiOutputDefinitionSerializer (class in django_mri.serializers.output.nifti_output_definition)
NiftiOutputSerializer (class in django_mri.serializers.output.nifti_output)
NiftiSerializer (class in django_mri.serializers.nifti)
NiftiValidator (class in django_mri.analysis.interfaces.matlab.spm.utils.nifti_validator)
NiftiViewSet (class in django_mri.views.nifti)
NONE (django_mri.models.choices.sequence_variant.SequenceVariant attribute)
number (django_mri.models.scan.Scan attribute)
NumberInFilter (class in django_mri.filters.scan_filter)
O
objects (django_mri.models.nifti.NIfTI attribute)
(django_mri.models.scan.Scan attribute)
(django_mri.models.sequence_type.SequenceType attribute)
ordering (django_mri.admin.ScanAdmin attribute)
ordering_fields (django_mri.views.scan.ScanViewSet attribute)
organize_output() (django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.segmentation.Segmentation method)
OSP (django_mri.models.choices.sequence_variant.SequenceVariant attribute)
output_class (django_mri.models.outputs.nifti_output_definition.NiftiOutputDefinition attribute)
OUTPUT_DEFINITIONS (django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.segmentation.Segmentation attribute)
OUTPUT_FILES (django_mri.analysis.interfaces.fsl.fsl_anat.FslAnat attribute)
output_images (django_mri.analysis.visualizers.FslAnatVisualizer attribute)
output_set (django_mri.models.outputs.nifti_output_definition.NiftiOutputDefinition attribute)
OutputDefinitions (class in django_mri.models.outputs.output_definitions)
P
PA (django_mri.utils.bids.DATA_TYPES attribute)
(django_mri.utils.bids.MODALITY_LABELS attribute)
page_size (django_mri.views.pagination.StandardResultsSetPagination attribute)
page_size_query_param (django_mri.views.pagination.StandardResultsSetPagination attribute)
pagination_class (django_mri.views.nifti.NiftiViewSet attribute)
(django_mri.views.scan.ScanViewSet attribute)
(django_mri.views.sequence_type.SequenceTypeViewSet attribute)
PARTICIPANTS_FILE_NAME (django_mri.utils.bids.Bids attribute)
path (django_mri.models.nifti.NIfTI attribute)
path() (in module django_mri.urls)
permission_classes (django_mri.views.defaults.DefaultsMixin attribute)
PHASE_ENCODING_DICT (django_mri.analysis.interfaces.fsl.topup.TopupWrapper attribute)
plot() (django_mri.views.scan.ScanViewSet method)
pre_output_instance_create() (django_mri.models.outputs.nifti_output_definition.NiftiOutputDefinition method)
preview_script() (django_mri.views.scan.ScanViewSet method)
Q
queryset (django_mri.views.nifti.NiftiViewSet attribute)
(django_mri.views.scan.ScanViewSet attribute)
(django_mri.views.sequence_type.SequenceTypeViewSet attribute)
R
read_json() (django_mri.models.nifti.NIfTI method)
ready() (django_mri.apps.DjangoMriConfig method)
RECON_ALL_INPUT_SPECIFICATION (in module django_mri.analysis.specifications.freesurfer.recon_all)
RECON_ALL_OUTPUT_SPECIFICATION (in module django_mri.analysis.specifications.freesurfer.recon_all)
REDUNDANT_LOG_PATTERN (django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.segmentation.Segmentation attribute)
RELATIVE_DARTEL_TEMPLATE_LOCATION (in module django_mri.analysis.interfaces.matlab.spm.cat12.utils.template_files)
RELATIVE_TISSUE_PROBABILITY_MAP_LOCATION (in module django_mri.analysis.interfaces.matlab.spm.cat12.utils.template_files)
remove_redundant_logs() (django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.segmentation.Segmentation method)
REORIENT2STD_INPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.reorient2std)
REORIENT2STD_OUTPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.reorient2std)
repetition_time (django_mri.models.scan.Scan attribute)
RM (django_mri.models.choices.scanning_sequence.ScanningSequence attribute)
ROBUSTFOV_INPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.robustfov)
ROBUSTFOV_OUTPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.robustfov)
router (in module django_mri.urls)
run() (django_mri.analysis.interfaces.fsl.fast.FastWrapper method)
(django_mri.analysis.interfaces.fsl.fsl_anat.FslAnat method)
(django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.segmentation.Segmentation method)
(django_mri.analysis.interfaces.mrtrix3.dwifslpreproc.DwiFslPreproc method)
run_input_set (django_mri.models.nifti.NIfTI attribute)
(django_mri.models.scan.Scan attribute)
run_output_set (django_mri.models.nifti.NIfTI attribute)
S
save() (django_mri.models.scan.Scan method)
Scan (class in django_mri.models.scan)
scan (django_mri.models.nifti.NIfTI attribute)
SCAN (django_mri.models.outputs.output_definitions.OutputDefinitions attribute)
scan_post_save_receiver() (in module django_mri.signals)
ScanAdmin (class in django_mri.admin)
ScanFilter (class in django_mri.filters.scan_filter)
ScanInput (class in django_mri.models.inputs.scan_input)
ScanInputDefinition (class in django_mri.models.inputs.scan_input_definition)
ScanInputDefinitionSerializer (class in django_mri.serializers.input.scan_input_definition)
ScanInputSerializer (class in django_mri.serializers.input.scan_input)
ScanManager (class in django_mri.models.managers.scan)
ScanningSequence (class in django_mri.models.choices.scanning_sequence)
ScanSerializer (class in django_mri.serializers.scan)
ScanType (class in django_mri.utils.scan_type)
ScanViewSet (class in django_mri.views.scan)
SE (django_mri.models.choices.scanning_sequence.ScanningSequence attribute)
search_fields (django_mri.views.scan.ScanViewSet attribute)
Segmentation (class in django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.segmentation)
SEGMENTATION_OUTPUT (in module django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.outputs)
SEGMENTATION_TRANSFORMATIONS (in module django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.transformations)
sequence_definition_set (django_mri.models.sequence_type.SequenceType attribute)
sequence_definitions (django_mri.models.sequence_type.SequenceType attribute)
sequence_type (django_mri.models.scan.Scan attribute)
SequenceType (class in django_mri.models.sequence_type)
SequenceTypeSerializer (class in django_mri.serializers.sequence_type)
SequenceTypeViewSet (class in django_mri.views.sequence_type)
SequenceVariant (class in django_mri.models.choices.sequence_variant)
serializer_class (django_mri.views.nifti.NiftiViewSet attribute)
(django_mri.views.scan.ScanViewSet attribute)
(django_mri.views.sequence_type.SequenceTypeViewSet attribute)
series_post_save_receiver() (in module django_mri.signals)
set_description_json() (django_mri.utils.bids.Bids method)
set_participant_tsv_and_json() (django_mri.utils.bids.Bids method)
SK (django_mri.models.choices.sequence_variant.SequenceVariant attribute)
SP (django_mri.models.choices.sequence_variant.SequenceVariant attribute)
spatial_resolution (django_mri.models.scan.Scan attribute)
SS (django_mri.models.choices.sequence_variant.SequenceVariant attribute)
StandardResultsSetPagination (class in django_mri.views.pagination)
study_groups (django_mri.models.scan.Scan attribute)
subject (django_mri.models.scan.Scan attribute)
suggest_subject() (django_mri.models.scan.Scan method)
SUPPLEMENTARY_OUTPUTS (django_mri.analysis.interfaces.mrtrix3.dwifslpreproc.DwiFslPreproc attribute)
SUSAN_INPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.susan)
SUSAN_OUTPUT_SPECIFICATION (in module django_mri.analysis.specifications.fsl.susan)
T
TEMPLATES (in module django_mri.analysis.interfaces.matlab.spm.utils.batch_templates)
time (django_mri.models.scan.Scan attribute)
TopupWrapper (class in django_mri.analysis.interfaces.fsl.topup)
transform_options() (django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.segmentation.Segmentation method)
TRANSFORMATIONS (django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.segmentation.Segmentation attribute)
TRSS (django_mri.models.choices.sequence_variant.SequenceVariant attribute)
U
uncompress() (django_mri.models.nifti.NIfTI method)
(in module django_mri.utils.compression)
uncompressed (django_mri.models.nifti.NIfTI attribute)
update_batch_template() (django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.segmentation.Segmentation method)
update_fields_from_dicom() (django_mri.models.scan.Scan method)
V
validate_and_fix() (django_mri.analysis.interfaces.matlab.spm.utils.nifti_validator.NiftiValidator method)
validate_and_fix_input_data() (django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.segmentation.Segmentation method)
validate_extension() (django_mri.analysis.interfaces.matlab.spm.utils.nifti_validator.NiftiValidator method)
value (django_mri.models.inputs.nifti_input.NiftiInput attribute)
(django_mri.models.inputs.scan_input.ScanInput attribute)
(django_mri.models.outputs.nifti_output.NiftiOutput attribute)
(django_mri.serializers.input.nifti_input.NiftiInputSerializer attribute)
(django_mri.serializers.input.scan_input.ScanInputSerializer attribute)
verbose_name (django_mri.apps.DjangoMriConfig attribute)
verbosify_output_dict() (in module django_mri.analysis.interfaces.matlab.spm.cat12.segmentation.utils.verbosify_output_dict)
visualize() (django_mri.analysis.visualizers.FslAnatVisualizer method)
W
warn_subject_mismatch() (django_mri.models.scan.Scan method)
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