SPM Utilities

Module contents

Utilities for the spm module.

Submodules

django_mri.analysis.interfaces.matlab.spm.utils.batch_templates module

Definition of the TEMPLATES constant.

django_mri.analysis.interfaces.matlab.spm.utils.batch_templates.TEMPLATES = {'CAT12 Segmentation': PosixPath('/home/docs/checkouts/readthedocs.org/user_builds/django-mri/checkouts/latest/django_mri/analysis/interfaces/matlab/spm/cat12/segmentation/batch_template.m')}

Batch templates dictionary, associating interface keys with template paths.

django_mri.analysis.interfaces.matlab.spm.utils.nifti_validator module

Definition of the NiftiValidator class.

class django_mri.analysis.interfaces.matlab.spm.utils.nifti_validator.NiftiValidator(allow_gz: bool = False)

Bases: object

A utility class used to validate .nii inputs and uncompress them if necessary.

validate_and_fix(path: pathlib.Path) → pathlib.Path

Validates the provided path represents a .nii file and uncompresses it if necessary.

Parameters:

path (Path) – .nii file path

Returns:

.nii file path

Return type:

Path

Raises:

• ValueError – Invalid suffix (not .nii)
• FileNotFoundError – File does not exist

validate_extension(path: pathlib.Path) → bool

Validate the given file’s extension.

Parameters:path (Path) – File path to check Returns:Valid or invalid Return type:bool